linc2function

A Deep Learning Approach to assign functions to long noncoding RNA

Contents

• Introduction
  • Research Abstract
  • Pipeline workflow
• Webpage
  • Usage
    • linc2function
    • Sequence
    • Architecture
    • Mode
    • Type
    • Submit
    • Reset
    • Test Data
  • Results
    • Transcript Details
    • SHAP values
    • Protein Interactome
    • RNA Interactome
    • RNA Structure (Arc)
    • RNA Structure (2D)
    • RNA Structure (2D)
• Command-line
  • System Requirements
    • Hardware Requirements
    • Software Requirements
  • Installation
    • Login
    • Change directory
    • Clone
    • Open linc2function
    • Python virtual environment
    • Create virtual environment
    • Activate virtual environment
    • Install dependencies
  • Usage
    • Human Specific Basic (HSB) Model
    • Species Agnostic Basic (SAB) Model
    • Human Specific Standard (HSS) Model
    • Species Agnostic Standard (SAS) Model
• Conservation Pipeline
  • Installation
    • Login
    • Change directory
    • Clone
    • Open linc2function_validation_data
    • Open ucr_overlaps
  • Download data
  • Create .bed files
    • Conserved Regions
    • Binding Sites
  • Install bedtools
  • Run bedtools
  • Analyse output