linc2function
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Introduction
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Conservation Pipeline
linc2function
linc2function
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linc2function
A Deep Learning Approach to assign functions to long noncoding RNA
Contents
Introduction
Research Abstract
Pipeline workflow
Webpage
Usage
linc2function
Sequence
Architecture
Mode
Type
Submit
Reset
Test Data
Results
Transcript Details
SHAP values
Protein Interactome
RNA Interactome
RNA Structure (Arc)
RNA Structure (2D)
RNA Structure (2D)
Command-line
System Requirements
Hardware Requirements
Software Requirements
Installation
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Change directory
Clone
Open linc2function
Python virtual environment
Create virtual environment
Activate virtual environment
Install dependencies
Usage
Human Specific Basic (HSB) Model
Species Agnostic Basic (SAB) Model
Human Specific Standard (HSS) Model
Species Agnostic Standard (SAS) Model
Conservation Pipeline
Installation
Login
Change directory
Clone
Open linc2function_validation_data
Open ucr_overlaps
Download data
Create .bed files
Conserved Regions
Binding Sites
Install bedtools
Run bedtools
Analyse output
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